Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVVVQRVKEASVTNDT-LNNQIKKGYCLLVGIGQNSTEQDADVIAKKIANARLFEDDNNKLNFNIQQMNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAYGLTVKTGEFGTHMNVSINNDGPVTIIYESQDGKIQ
2DBO Chain:A ((1-147))
MRAVIQRVKKSWVEVDGKVVGSINEGLNVFLGVRKGDTEEDIEKLVNKILNLRIFEDERGKFQYSVLDIKGEILVVSQFTLYANVKKGRRPSFEEAEEPKRAKELYEKFVDKIKESGLKVETGIFGAMMDVFIENWGPVTIIIDSRE----
General information:
TITO was launched using:
RESULT:
Template:
2DBO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63491 for 1120 contacts (-56.7/contact) +
2D Compatibility (PS) -16064 + (NN) -6540 + (LL) 216
1D Compatibility (HY) -14400 + (ID) 3250
Total energy: -103529.0 ( -92.44 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_2DBO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DBO-query.scw
PDB file :
Tito_Scwrl_2DBO.pdb
: