Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLKQYVSEVQDWPKPGVSFKDITTIMDNGEAYGYATDKIVEYAKDRDVDIVVGPEARGFIIGCPVAYSMGIGFAPVRKEGKLPREVIRYEYDLEYGTNVLTMHKDAIKPGQRVLITDDLLATGGTIEAAIKLVEKLGGIVVGIAFIIELKYLNGIEKIK--DYDVMSLISYDE
2DY0 Chain:A ((10-182))
-YLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRLEKQGITSYSLVPFPG
General information:
TITO was launched using:
RESULT:
Template:
2DY0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147382 for 1369 contacts (-107.7/contact) +
2D Compatibility (PS) -18001 + (NN) -1269 + (LL) 208
1D Compatibility (HY) -16800 + (ID) 4350
Total energy: -187594.0 ( -137.03 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_2DY0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DY0-query.scw
PDB file :
Tito_Scwrl_2DY0.pdb
: