Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQFSLLIYIVVIFAVMYFLMIRPQQKRAKQHRELINNIQSGQRITTIGG----IKGTVKAVDETTVVITVNGHGTELTFEKPAIKQVDPS
2DO3 Chain:A ((465-514))
------------------------------AQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVL----------
General information:
TITO was launched using:
RESULT:
Template:
2DO3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17403 for 240 contacts (-72.5/contact) +
2D Compatibility (PS) -5474 + (NN) -3301 + (LL) 4456
1D Compatibility (HY) -3200 + (ID) 550
Total energy: -25472.0 ( -106.13 by residue)
QMean score : 0.711
(partial model without unconserved sides chains):
PDB file :
Tito_2DO3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DO3-query.scw
PDB file :
Tito_Scwrl_2DO3.pdb
: