Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKVIGLTGGIASGKSTVSELLSVFGFKVVDADKAAREAVKKGSKGLAQVREVFGDEAIDENGEMNRRYMGDLVFNHPEKRLELNAIIHPIVRDIMEEEKQEYLKQGYN-VIMDIPLLFENELENTVDEVWVVYTSESIQMDRLMQRNNLSLEDAKARVYSQISIDKKSRMADHVIDNLGDKLELKQNLERLLEEEGYIEKPNYGEED
1VHT Chain:A ((3-197))
LRYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQ---QATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPDAIASDVARLHAHYLQ----------
General information:
TITO was launched using:
RESULT:
Template:
1VHT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59946 for 1414 contacts (-42.4/contact) +
2D Compatibility (PS) -21622 + (NN) -8714 + (LL) 576
1D Compatibility (HY) -10400 + (ID) 3150
Total energy: -103256.0 ( -73.02 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_1VHT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VHT-query.scw
PDB file :
Tito_Scwrl_1VHT.pdb
: