Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSDFNHTDHSTTNHSQTPRYRRPKFPWFKTVIVALIAGIIGALLVLGIGKVLNSTILNKDGSTVQTTNNKGGNQLDGQSKKFGTVHEMIKSVSPTIVGVINMQKASSVDDLLKGKSSKPSEAGVGSGVIYQINNNSAYIVTNNHVIDGANEIRVQLHNKKQVKAKLVGKDAVTDIAVLKIENTKGIKAIQFANSSKVQTGDSVFAMGNPLGLQFANSVTSGIISASERTIDAETTGGNTKVSVLQTDAAINPGNSGGALVDINGNLVGINSMKIAATQVEGIGFAIPSNEVKVTIEQLVKHGKIDRPSIGIGLINLKDIPEEEREQLHTDREDGIYVAK-----ADSDIDLKKGDIITEIDGKKIKDDVDLRSYLYENKKPGESVTVTVIRDGKTKEVKVKLKQQKEQPKRQSRSERQSPGQGDRDFFR-------------------------------------------------------------------------- |
| 3PV2 Chain:A ((6-439)) | --------------------------------------------------------------------------------------------MPSMAPVLKNIMPAIVNVAVQGYLPNRKFESIGSGVI--IDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKI-DAKNLKSLVIGDSDKLEVGDFVVAIGNPFGL--SQSATFGIVSALKNF--------------IQTDAAINPGNSGGALVNAKGELIGINTAILV-----GIGFAIPINMVKDVAQQIIKFGSIHRGLMGIFVQHLT--PELAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTIS-LLRVGSTVKIIVERDNKPLTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQEKKKELLVQVLRGPGSMYLLVI |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PV2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -63290 for 2452 contacts (-25.8/contact) +
2D Compatibility (PS) -32657 + (NN) -8263 + (LL) 6632
1D Compatibility (HY) -20000 + (ID) 5750
Total energy: -123328.0 ( -50.30 by residue)
QMean score : 0.463
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