Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTHYHFVGIKGSGMSSLAQIMHDLGHEVQGSDIENYVFTEVALRNKGIKI-LPFDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVSYNDFLGQIIDQYTSVAVTGAHGKTSTTGLLSHV-MNGDKKTSFLIGD-----GTGMGLPESDYFAFEACEYRRHFLSYKPDYAIMTNIDFDHPDYFK-DINDVFDAFQEMAHNVK---KGIIAWGDDEHLRKIEADVP--IYYYGFKDSDDIYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFN----------ETTIANQVIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRVFLCEIFGSIRENTGALTIQDLIDKIEGASLIN-------EDSINVLEQFDNA--VVLFMGAGDIQKLQNAYLDKLGMKNAF |
| 4HV4 Chain:A ((24-474)) | --HIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQ-HLTALGAQIYFHHRPENVLDASVVVVSTAISADNPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCI-DDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIEVTLNAPGRHNALNAAAAVAVATEEGIEDEDILRALVGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPTEVDATIKAARAGWPDKRIVMLFQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGEPPIPGADSRALCRTIRNRGKLDPILVPDSESAPEMLAQILNGEDLILVQGAGNIGKI-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4HV4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -248217 for 3570 contacts (-69.5/contact) +
2D Compatibility (PS) -45444 + (NN) -18259 + (LL) 1192
1D Compatibility (HY) -27200 + (ID) 6500
Total energy: -344428.0 ( -96.48 by residue)
QMean score : 0.549
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