Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNFEGKLIGKDLKVAIVVSRFNDFITGRLLEGAKDTLIRHDVNEDNIDVAFVPGAFEIPLVAKKLASSGNYDAIITLGCVIRGATSHYDYVCNEVAKGVSKVNDQTNVPVIFGILTTESIEQAVERAGTKAGNKGAEAAVSAIEMANLLKSIKA
1RVV Chain:A ((3-153))
-IIQGNLVGTGLKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENIEQAIERAGTKAGNKGVDCAVSAIEMANLNRSF--
General information:
TITO was launched using:
RESULT:
Template:
1RVV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105456 for 1274 contacts (-82.8/contact) +
2D Compatibility (PS) -17093 + (NN) -10791 + (LL) 416
1D Compatibility (HY) -17200 + (ID) 5100
Total energy: -155224.0 ( -121.84 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_1RVV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RVV-query.scw
PDB file :
Tito_Scwrl_1RVV.pdb
: