Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKLNVEVFADGADIEEMKAAYKNKQVDGFTTNPSLMAKAGVT--DYKAFAEEAVKEIPDASISFEVFADDLETMEKEAAILKQYGENVFVKIPIVNTKGESTIPLIKKLSADNVRLNVTAVYTIEQVKEITEAVTEGVPTYVSVFAGRIADTGVDPLPLMKEAVKVTHSKDGVK--LLWASCRELFNVIQADEIGADIITRPADVVKKVNTNLGRDINELSVDTVKGFAKDIQSSGLSIL
3S1U Chain:D ((1-195))
-----MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILK-IVDGPVSVEVVSTKYEGMVEEARKIHGLGDNAVVKIPMT----EDGLRAIKTLSSEHINTNCTLVFNPIQA---LLAAKAGV-TYVSPFVGRLDDIGEDGMQII-DMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSL-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3S1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115560 for 1601 contacts (-72.2/contact) +
2D Compatibility (PS) -21460 + (NN) -10249 + (LL) 2212
1D Compatibility (HY) -18000 + (ID) 3450
Total energy: -166507.0 ( -104.00 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_3S1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S1U-query.scw
PDB file :
Tito_Scwrl_3S1U.pdb
: