Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKNVVIKSLATLTILTSVTGIGTTLVEEVQQTAKAENNVTKIQDTNIFPYTGVVAFKSATGFVVGKNTILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSIKKIINYPGKEDVSVIQVEERAIERGPKGFNFNDNVTPFKYAAGAKAGERIKVIGYPHPYKNKYVLYESTGPVMSVEGSSIVYSAHTESGNSGSPVLNSNNELVGIHFASDVKNDDNRNAYGVYFTPEIKKFIAENIDK
4K1T Chain:A ((2-206))
-----------------------------------SENNVTKVKDTNIFPYTGVVAFKSATGFVVGKNTILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSIKKIINYPGKEDVSVIQVEERAIERGPKGFNFNDNVTPFKYAAGAKAGERIKVIGYPHPYKNKYVLYESTGPVMSVEGSSIVYSAHTESGNSGSPVLNSNNELVGIHFAS----DDNRNAYGVYFTPEIKKFIAENIDK
General information:
TITO was launched using:
RESULT:
Template:
4K1T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79592 for 1725 contacts (-46.1/contact) +
2D Compatibility (PS) -22957 + (NN) -15610 + (LL) 3316
1D Compatibility (HY) -24800 + (ID) 9900
Total energy: -149543.0 ( -86.69 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_4K1T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K1T-query.scw
PDB file :
Tito_Scwrl_4K1T.pdb
: