Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLYTSYGTYGFLHQIKINNPTHQLFQFSASDTSVIFEETDGETVLKSPSIYEVIKEIGEFSEHHFYCAIFIPSTEDHAYQLEKKLISVDDNFRNFGGFKSYRLLRPAKGTTYKIYFGFADRHAYEDFKQSDAFNDHFSKDALSHYFGSSGQHSSYFERYLYPIKE
4AE5 Chain:C ((2-166))
-KKLYTSYGTYGFLHQIKINNPTHQLFQFSASDTSVIFEETDGETVLKSPSIYEVIKEIGEFSEHHFYCAIFIPSTEDHAYQLEKKLISVDDNFRNFGGFKSYRLLRPAKGTTYKIYFGFADRHAYEDFKQSDAFNDHFSKDALSHYF-------SYFERYLYPIK-
General information:
TITO was launched using:
RESULT:
Template:
4AE5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82384 for 1160 contacts (-71.0/contact) +
2D Compatibility (PS) -17190 + (NN) -7843 + (LL) 48
1D Compatibility (HY) -22800 + (ID) 7850
Total energy: -138019.0 ( -118.98 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_4AE5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AE5-query.scw
PDB file :
Tito_Scwrl_4AE5.pdb
: