Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYIPESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEPFLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQGGDVHA
4RVC Chain:A ((4-241))
--LEVKDLSGGYTAQNVLEDVTFVVDRGEMVALIGLNGAGKSTTIKHIIGLMEPRRGAISINGYRLADGPETYRRQFAYIPETPVLYEELTLEEHLRLAAMAYGLSEAEYERRLPPLLREFRLERRLSSFPAHFSKGMKQKVMIVCAFLLEPPLYIIDEPFLGLDPLAIHALLERMNEQKAKGAGILLSTHILATAERYCDSFVILHNGRVKAKGTLDDIRRQFGLRGASLDELYVELTK------
General information:
TITO was launched using:
RESULT:
Template:
4RVC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -184824 for 1902 contacts (-97.2/contact) +
2D Compatibility (PS) -25878 + (NN) -11130 + (LL) 220
1D Compatibility (HY) -30400 + (ID) 6700
Total energy: -258712.0 ( -136.02 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_4RVC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RVC-query.scw
PDB file :
Tito_Scwrl_4RVC.pdb
: