Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVILVDDHYIVRQGLRFLLSTIENIEVLQDFADGETFLEYLKEHE-HPDIVLLDLVMPGMNGIEITEYIKAHYPEIKVLVLTSYVDDEHVISAINKGADGYEMKDVEPQQLIETIRRVMNGEKMIHPKAQ-DVFETVSQKPHYTNKLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI
4IF4 Chain:D ((3-207))
--KVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIA--KAHELKPDLILMDLLMEDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI
General information:
TITO was launched using:
RESULT:
Template:
4IF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105481 for 1534 contacts (-68.8/contact) +
2D Compatibility (PS) -21802 + (NN) -6598 + (LL) 396
1D Compatibility (HY) -18400 + (ID) 4200
Total energy: -156085.0 ( -101.75 by residue)
QMean score : 0.628
(partial model without unconserved sides chains):
PDB file :
Tito_4IF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IF4-query.scw
PDB file :
Tito_Scwrl_4IF4.pdb
: