Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEQQTIEQIKARLNKFIEDIDHVNPDEVRVEDIDEWIGLLDQLEEKVKLVSK
2Y9Z Chain:A ((157-196))
----KTLEEVRAYAKAFWSNIE-------RIEDYEKYLKIIENEEEKIKRV--
General information:
TITO was launched using:
RESULT:
Template:
2Y9Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6889 for 164 contacts (-42.0/contact) +
2D Compatibility (PS) -4217 + (NN) -1225 + (LL) 624
1D Compatibility (HY) -4000 + (ID) 650
Total energy: -16357.0 ( -99.74 by residue)
QMean score : 0.652
(partial model without unconserved sides chains):
PDB file :
Tito_2Y9Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y9Z-query.scw
PDB file :
Tito_Scwrl_2Y9Z.pdb
: