Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNQDRPMKSMSESKCYKNRQVFPQDTNHHHTMFGGTLMANIDEIAAITAMKHAGAQVVTASTDSVDFLKPIKTGDILQYVAMVSYAGTSSMEVVVQIRIDDVFNNKHDLAALSYLTFVALDDEGKPKHVPGVYPEDDVEKWFYDTAPQRVERRKARRIESKQTIEYLAQVQHIRD
4NCP Chain:A ((10-171))
------PMKSMSESKCYKNRQVFPQDTNHHHTMFGGTLMANIDEIAAITAMKHAGAQVVTASTDSVDFLKPIKTGDILQYVAMVSYAGTSSMEVVVQIRIDDVFNNKHDLAALSYLTFVALDDEGKPKHVPGVYPEDDVEKWFYDTAPQRVERRKARRIESKQTIEYL--------
General information:
TITO was launched using:
RESULT:
Template:
4NCP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63663 for 1215 contacts (-52.4/contact) +
2D Compatibility (PS) -17613 + (NN) -3360 + (LL) 1172
1D Compatibility (HY) -21600 + (ID) 8100
Total energy: -113164.0 ( -93.14 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_4NCP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NCP-query.scw
PDB file :
Tito_Scwrl_4NCP.pdb
: