Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIH-DIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELF--EATDDFDYIVAMDQSNVDNIKSI----NPNLKGQLFKLLEFSNMEESDVPDPYYTNNFEGVYDMVLSSCDNLIDYIVKDANLKEG
4ETM Chain:A ((18-173))
MISVLFVCLGNICRSPMAEAIFRDLAAKKGLEGKIKADSAGIGGWHIGNPPHEGTQEILRREGISFDGMLARQVSEQDLDDFDYIIAMDAENIGSLRSMAGFKNTSHIKRLLDYVEDSDL--ADVPDPYYTGNFEEVCQLIKTGCEQLLASIQKEKQL---
General information:
TITO was launched using:
RESULT:
Template:
4ETM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99564 for 1255 contacts (-79.3/contact) +
2D Compatibility (PS) -16218 + (NN) -8830 + (LL) 204
1D Compatibility (HY) -16400 + (ID) 3600
Total energy: -144408.0 ( -115.07 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_4ETM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ETM-query.scw
PDB file :
Tito_Scwrl_4ETM.pdb
: