Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYDIKKWRHIFKLDPAKHISDDDLDAICMSQTDAIMIGGTDDVTEDNVIHLMSRIRRYPLPLVLEISNIESVMPGFDFYFVPTVLNSTDVAFHNGTLLEALKTYGHSIDFEEVIFEGYVVCNADSKVAKHTKANTDLTTEDLEAYAQMVNHMYRLPVMYIEYSGIYGDVSKVQAVSEHLTETQLFYGGGISSEQQATEMAAIADTIIVGDIIYKDIKKALKTVKIKESSK
3W01 Chain:B ((6-233))
MYDIKKWRHIFKLDPAKHISDDDLDAICMSQTDAIMIG----VTEDNVIHLMSKIRRYPLPLVLEISNIESVMPGFDFYFVPTVLNSTDVAFHNGTLLEALKTYGHSIDFEEVIFEGYVVCNADSKVAKHTKANTDLTTEDLEAYAQMVNHMYRLPVMYIEYSGIYGDVSKVQAVSEHLTETQLFYGGGISSEQQATEMAAIADTIIVGDIIYKDIKKALKTVKIKES--
General information:
TITO was launched using:
RESULT:
Template:
3W01.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172689 for 1812 contacts (-95.3/contact) +
2D Compatibility (PS) -24571 + (NN) -10369 + (LL) -236
1D Compatibility (HY) -35200 + (ID) 11150
Total energy: -254215.0 ( -140.30 by residue)
QMean score : 0.655
(partial model without unconserved sides chains):
PDB file :
Tito_3W01.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W01-query.scw
PDB file :
Tito_Scwrl_3W01.pdb
: