Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKFFFIGLLVFVVFFTAATIIWFSYDKNKYGTKQYDKTFKDDAFDNVSINLD-STELRIKRGNQFRVKYDGDNDIL----INIVDKTLKISDKRSKTRGYAIDMNPFHENKK-TLTIEMPDKMIKRLNLSSGAGSVRISDVDLENTSIQSINGEVVIKNSNLDALDSKTNNSSTYIS-KSNIKNSNIKVVIGTLQIDKSQIKQSIFLNDHGDIEFKNMPSKVDAKASTKQGDIRFKYDSKPEDTILKLNPGTGDSVVKNKTFTNGKVGKSDNVLEFYTIDGNIKVE |
| 3PET Chain:A ((4-221)) | ---------------------------GIQPSKKLITRDYKVKEFNKIDAGTVGNIYYTQSTDGKTDLQIYGPDNIVALIQVAVKDNTLFLSIDKSK---------KVRNFKKMKITITSPT--LNGISFK-GVGDVHIEN------GLTTDNLDIESKGVGNVDIQSLTCQKLNVQSMGV-----------GDVKLEGTAQIAALHSKGVGNIEAGNLRANAVEASSQGVGDITCNATESIDAAV----RGVGSIKYK---------GSPTIKSLSKKGVGTIKNI |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3PET.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 55160 for 1745 contacts (31.6/contact) +
2D Compatibility (PS) -22298 + (NN) -5588 + (LL) 5664
1D Compatibility (HY) -4000 + (ID) 2050
Total energy: 26888.0 ( 15.41 by residue)
QMean score : 0.256
|
|
|