Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNLETYFKNSQPLNEYID-GMKTNQDTVLSIYQSFELPEDDSRIKKIKEMNYSKVLVIT--EDWCGDAMMNLPILKHISEAL-NLEVRVFHRDDDTKLIDQYLTNGKSRAIPIFVFLNDQFEQETVWGPRANEVQKFVTDVRADKLPSKDHPDYADLEKETHLVISNRYKTDASFWKAVYNSILNKLENK-
1Z6N Chain:A ((1-166))
MASYAELFDIGEDFAAFVGHGLATEQGAVARFRQKLESNGLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALER-IAIPLVLVLDEEFNLLGRFVERPQAVLDGGPQALAAYKAGD-------------------------YLEHAIGDVLAIIEGAA
General information:
TITO was launched using:
RESULT:
Template:
1Z6N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63008 for 1233 contacts (-51.1/contact) +
2D Compatibility (PS) -17374 + (NN) -5209 + (LL) 1240
1D Compatibility (HY) -8800 + (ID) 1500
Total energy: -94651.0 ( -76.76 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_1Z6N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z6N-query.scw
PDB file :
Tito_Scwrl_1Z6N.pdb
: