Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYKRLFISRVILIFALILVISTPNVLAESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNVGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG
1CK1 Chain:A ((1-239))
---------------------------ESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNINDKKLNNYDKVKTELLNEDLANKYKDEVVDVYGSNYYVNCYFSSKDNVGKVTSGKTCMYGGITKHEGNHFDNGNLQNVLIRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIESNGNTFWYDMMPAPGDKFDQSKYLMIYKDNKMVDSKSVKIEVHLTTKNG
General information:
TITO was launched using:
RESULT:
Template:
1CK1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48157 for 1805 contacts (-26.7/contact) +
2D Compatibility (PS) -26387 + (NN) -14002 + (LL) 3368
1D Compatibility (HY) -32400 + (ID) 11500
Total energy: -129078.0 ( -71.51 by residue)
QMean score : 0.678
(partial model without unconserved sides chains):
PDB file :
Tito_1CK1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CK1-query.scw
PDB file :
Tito_Scwrl_1CK1.pdb
: