Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYETYHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHNLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYEPRCRAHHIVAPSDNNKEEL
2JA1 Chain:A ((3-193))
MYLINQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFEHITEELDVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQAVCSVCGSPASRTQRLIDGEPAAFDDPIILVGASESYEPRCRHCHAV-PA-------
General information:
TITO was launched using:
RESULT:
Template:
2JA1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67440 for 1485 contacts (-45.4/contact) +
2D Compatibility (PS) -20775 + (NN) -8572 + (LL) 356
1D Compatibility (HY) -22400 + (ID) 6100
Total energy: -124931.0 ( -84.13 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_2JA1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JA1-query.scw
PDB file :
Tito_Scwrl_2JA1.pdb
: