Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGH-FAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
1VHJ Chain:A ((2-231))
---ATPHINAQMGDFADVVLMPGDPLRAKYIAENFLDNAVQVCDVRNMFGYTGTYKGRRISVMGHGMGIPSCSIYVTELIKDYGVKKIIRVGSCGAVNEGIKVRDVVIGMGACTDSK-VNRIRFKDHDFAAIADYKMVKAAEEAAKARGIDVKVGNLFSAELFYTPDPSMFDVMDKYGIVGVEMEAAGIYGVAAEYGAKALAICTVSDHIKTGE---SEERQNTFNEMIEIALD---
General information:
TITO was launched using:
RESULT:
Template:
1VHJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148970 for 1977 contacts (-75.4/contact) +
2D Compatibility (PS) -24214 + (NN) -9702 + (LL) 1116
1D Compatibility (HY) -24000 + (ID) 6100
Total energy: -211870.0 ( -107.17 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_1VHJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VHJ-query.scw
PDB file :
Tito_Scwrl_1VHJ.pdb
: