Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILV-DVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSG--DLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYF-DGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
3E8X Chain:A ((23-234))
-RVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEED----FSHAFASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGT---VDPDQGPMNMRHYLVAKRLADDELKRSSLDYTIVRPGPLSNEESTGKVTVSPHFSEITRSITRHDVAKVIAELVDQQHTIGKTFEVLNGDTPIAKVVEQL-----
General information:
TITO was launched using:
RESULT:
Template:
3E8X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108276 for 1761 contacts (-61.5/contact) +
2D Compatibility (PS) -22492 + (NN) -6006 + (LL) 1260
1D Compatibility (HY) -18800 + (ID) 3900
Total energy: -158214.0 ( -89.84 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_3E8X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E8X-query.scw
PDB file :
Tito_Scwrl_3E8X.pdb
: