Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSELFS--NDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGE---VVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
2FEW Chain:A ((4-144))
---LFKLGAENIFLGRKAATKEEAIRFAGEQLVKGGYVEPEYVQAMLDREKLTPTYLGESIAVPQGTVEAKDRVLKTGVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTTSVDEVLELL-----
General information:
TITO was launched using:
RESULT:
Template:
2FEW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81196 for 1093 contacts (-74.3/contact) +
2D Compatibility (PS) -14841 + (NN) -3932 + (LL) 704
1D Compatibility (HY) -13600 + (ID) 2450
Total energy: -115315.0 ( -105.50 by residue)
QMean score : 0.662
(partial model without unconserved sides chains):
PDB file :
Tito_2FEW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FEW-query.scw
PDB file :
Tito_Scwrl_2FEW.pdb
: