Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDFSNFFQNLSTLKIVTSILDLLIVWYVLYLLITVFKGTKAIQLLKGILVIVIGQQISMILNLTATSKLFDIVIQWGVLALIVIFQPEIRRALEQLGRGSFLKRYTSNTYS----KDEEKLIQSVSKAVQYMAKRRIGALIVFEKETGLQDYIETGIAMDSNISQELLINVFIPNTPLHDGAMIIQGTKIAAAASYLPLSDSPKISKSLGTRHRAAVGISEVSDAFTVIVSEETGDISVTFDGKLRRDISNEIFEELLAEHWFGTRFQKKGVK
4RV7 Chain:C ((16-168))
---------------------------------------------------------------------------------------------------------NSSSYGSRIEREQHHLIESIEKSTQYMAKRRIGALISVARDTGMDDYIETGIPLNAKISSQLLINIFIPNTPLHDGAVIIKGNEIASAASYLPLSDSPFLSKELGTRHRAALGISEVTDSITIVVSEETGGISLTKGGELFRDVSEEELHKIL---------------
General information:
TITO was launched using:
RESULT:
Template:
4RV7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127332 for 1165 contacts (-109.3/contact) +
2D Compatibility (PS) -16321 + (NN) -7983 + (LL) 11996
1D Compatibility (HY) -16800 + (ID) 4650
Total energy: -161090.0 ( -138.27 by residue)
QMean score : 0.685
(partial model without unconserved sides chains):
PDB file :
Tito_4RV7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RV7-query.scw
PDB file :
Tito_Scwrl_4RV7.pdb
: