Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLDKNQLAKYKQDHLCEYEKIMSNNEKEALEEKVASLDLDFIAKLYNDLYINKKTIDDVSAVSEVKYDIKSQMSDDEIKRLEEQGLQAIKEGQFAVLLMAGGQGTRLGYKGPKGSFEIE---GVSLFELQANQLKTLNHQS----G--HTIQWYIMTSDINHEETLAYFEAHSYFGYDQEAIHFFKQDNIVALSEEGKLILNQQGRIMETPNGNGGVFKSLDKAGYLEEMSNNGVKYIFLNNIDNVLVKVLDPLFAGFTVEHDYDITSKTIQPK-PGESVGRLVNVDCKDTVLEYSELDPEVAN--------QFNNANIGIHAFKLGFILNAVN---RELPYHLAIKNLKQLDENFGVIE---QPT-LKFELFYFDIFTYGTSFVTLQVPREEEFSPLKNKEGK---DSVATATEDLRRMGLI |
| 1JV1 Chain:A ((4-430)) | NDLKLTLSKAGQEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGF----RMEPVPREVLGS-ATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDT-QGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHH- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JV1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -129838 for 3126 contacts (-41.5/contact) +
2D Compatibility (PS) -42605 + (NN) -21414 + (LL) 432
1D Compatibility (HY) -30800 + (ID) 6650
Total energy: -230875.0 ( -73.86 by residue)
QMean score : 0.481
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