Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIALGCDHIVTDTKMRVSEFLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEQVVSGNADLGVCICGTGVGINNAVNKVPGVRSALVRDMTSALYAKEELNANVIGFGGRIIGELLMCDIIDAFINAEYKATEENKKLIAKIKHLETSNADQAD-PHFFDEFLEKWDRGEYHD
4LFM Chain:B ((1-172))
MIIAIGNDHIVTMQKIEISNMLKDMGYTVIDEGTYDTHRTHYPIYGKKVAEDVADGRADLGIVMCGTGIGISTAADKNEGIRAAMCDDVTSAVYAREQLNANVLGIGGAVVGVHLIQDIVKAYLDATYKETPENKKLIDKIDNIAKPNPDQKDNPHFFDAELEKWAEGVYHD
General information:
TITO was launched using:
RESULT:
Template:
4LFM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115382 for 1384 contacts (-83.4/contact) +
2D Compatibility (PS) -18347 + (NN) -6328 + (LL) 0
1D Compatibility (HY) -17200 + (ID) 4900
Total energy: -162157.0 ( -117.17 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_4LFM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LFM-query.scw
PDB file :
Tito_Scwrl_4LFM.pdb
: