Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKELTMDGKHTVPYTISVDGITALHRTYFVFPENKKVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKKNDDAKNSIDPSTIKQIQIVVK
1YN4 Chain:A ((1-99))
------------------------------------------GKHTVPYTISVDGITALHRTYFVFPENKKVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKKNDDAKNSIDPSTIKQIQIVVK
General information:
TITO was launched using:
RESULT:
Template:
1YN4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33495 for 674 contacts (-49.7/contact) +
2D Compatibility (PS) -11152 + (NN) -3552 + (LL) 2664
1D Compatibility (HY) -12000 + (ID) 4950
Total energy: -62485.0 ( -92.71 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_1YN4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YN4-query.scw
PDB file :
Tito_Scwrl_1YN4.pdb
: