Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLVTATTLTAGIGTALVGQAHHADAAENYTNYNNYNYNTTQTTTTTTTTTTTSSISHSGNLYTAGQCTWYVYDKVGGEIGSTWGNANNWAAAAQGAGFTVNHTPSKGAILQSSEGPFGHVAYVESVNSDGSVTISEMNYSGGPFSVSSRTISASEAGNYNYIHI
2LRJ Chain:A ((2-113))
------------------------------------------------------SSISHSGNLYTAGQCTWYVYDKVGGEIGSTWGNANNWAAAAQGAGFTVNHTPSKGAILQSSEGPFGHVAYVESVNSDGSVTISEMNYSGGPFSVSSRTISASEAGNYNYIHI
General information:
TITO was launched using:
RESULT:
Template:
2LRJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69645 for 874 contacts (-79.7/contact) +
2D Compatibility (PS) -12714 + (NN) -11325 + (LL) 3176
1D Compatibility (HY) -12800 + (ID) 5600
Total energy: -108908.0 ( -124.61 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_2LRJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LRJ-query.scw
PDB file :
Tito_Scwrl_2LRJ.pdb
: