Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNKAERQNLIITAIQQ-NKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGYQIQQAQS-K---IALNLSETQLSALFLVLNESQSYSTLPYKSEINAIIKQCLSLPQTRLRKLLKRMDFYIKFDDTQHMTLPMLFSDILIYCTERNVMLVDHRVDDNIKAENVIFIGLLCKHGHWHAVIYDIAQDKTAELEIENIIDISYSFGKTIQTRDISIDNYHQFLNPIDS |
1J5Y Chain:A ((18-100)) | -VRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVAT--P-RGYVLAGGKSGVSRLVAVKHAPEEIKEEL---------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1J5Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -25195 for 436 contacts (-57.8/contact) +
2D Compatibility (PS) -8425 + (NN) -1783 + (LL) 11644
1D Compatibility (HY) -6000 + (ID) 900
Total energy: -30659.0 ( -70.32 by residue)
QMean score : 0.630
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