Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGETFKLPVEVDKFNWYHILRKIESYADIKVERRVNEDVAFI-TDNGNYILDCKLPKGIDPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK
4GMK Chain:B ((7-226))
------LKQLVGTKAVEWIKDGMIVGLGTGSTVKYMVDALGKRVNEEGLDIVGVTTSIRTAEQAKSLGIVIKDIDEVDHIDLTIDGADEISSDFQGIKGGGAALLYEKIVATKSNKNMWIVDESKMVDDLGQ-FPLPVEVIPYGSGTVFKRFEEKG-LNPEFRKNEDGSLLHTDSDNYIIDLHLGKIENPKELGDYLINQVGVVEHGLFLDIVNTVIVGRQDGPEVLE-
General information:
TITO was launched using:
RESULT:
Template:
4GMK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163537 for 1840 contacts (-88.9/contact) +
2D Compatibility (PS) -24066 + (NN) -11005 + (LL) 636
1D Compatibility (HY) -18400 + (ID) 4600
Total energy: -220972.0 ( -120.09 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_4GMK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GMK-query.scw
PDB file :
Tito_Scwrl_4GMK.pdb
: