Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNFNQFENQNFFNGNPSDTFKDLGKQVF-------NYFSTPSFVTNIYETDELYYLEAELAGVNKEDISIDF-NNNTLTIQATRSAKYKSEQ---LILDERNFESLMRQFDF-EAVDKQHITASFENGLLTITLPKIKPSNETTSSTSIPIS--
1SHS Chain:A ((33-147))
---------------------------TGIQISGK-----GFMPISIIEGDQHIKVIAWLPGVNKEDIILNAV-GDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKK------GINIE
General information:
TITO was launched using:
RESULT:
Template:
1SHS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55223 for 610 contacts (-90.5/contact) +
2D Compatibility (PS) -10801 + (NN) -1264 + (LL) 1048
1D Compatibility (HY) -6400 + (ID) 1650
Total energy: -74290.0 ( -121.79 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_1SHS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SHS-query.scw
PDB file :
Tito_Scwrl_1SHS.pdb
: