Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIVIADDHAVVRTGFSMILNYQNDMEVVATAADGVEAYQKVMEYKPDVLLMDLSMPPGESGLIATSKIADSFPETKILILTMFDDEEYLFHVLRNGAKGYILKNAPDEQLLLAIRTVYKGETYVDMKLTTSLVNEFVSNSNQDTANTTDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKLLEF
4LDZ Chain:B ((6-191))
ISIFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFVKKRQPDVCIMDIEMP-GKTGLEAAEELKDTG--CKIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELANAIRSVMNGKRIYAPELMEDLYSE------------ANP---LTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIE-------------
General information:
TITO was launched using:
RESULT:
Template:
4LDZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92946 for 1380 contacts (-67.4/contact) +
2D Compatibility (PS) -20078 + (NN) -13513 + (LL) 2208
1D Compatibility (HY) -16000 + (ID) 3550
Total energy: -143879.0 ( -104.26 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_4LDZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LDZ-query.scw
PDB file :
Tito_Scwrl_4LDZ.pdb
: