Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MNRKILPVKPISQLFPIPMVMGCEGVSAAMMLQYNNQHIPATEIMRHWPTHPNN-------PHKGYVGHHLFIKLGNYHQTIFPEAYVPFLQKYNPN-IVDGTGKSLEDLKGIIDQGQPVLIYHTNLGSKP---LLRVFRFDNKPAKQVSNIHVTLLIGYDDYYYYYIDPLWSHIRRGLVLPAIIPNRKQIIKIRKEKMEYSFNSPGRKCIYVQPHSYTIENQQQNKHT
3ERV Chain:A ((29-228))
DEKVILSNVPFIQQLPELDR--GCEVTSLAMMLQYAGITVDKMKLANEIKKVDFMNDGVRGNPNEGFVGNIYTFSESGY--GVYHGPLFQLAKKYLPNKAVDLTGKSIEELYKSVKAGQPVVIITNATFAPLDEDEFTTWETNNGDVSITYNEHCVVLIGYDQESVYIRDPLKDSLDV---------------KVPREKFEQAWVQMGSQAISYVKRSK-----------
General information:
TITO was launched using:
RESULT:
Template:
3ERV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126307 for 1528 contacts (-82.7/contact) +
2D Compatibility (PS) -21028 + (NN) -11744 + (LL) 2540
1D Compatibility (HY) -9600 + (ID) 2750
Total energy: -168889.0 ( -110.53 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_3ERV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ERV-query.scw
PDB file :
Tito_Scwrl_3ERV.pdb
: