Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIRHIRNATAVIEYGGKRILIDPMLSDKGSFDPFPNSPRQDQKNPLVELPMAIEDIINDIDLVILTHLHIDHFDPKAIEVLPKDIKIYAQNEEDASEVERYGFTNVSVFNDVTHIGEIELIKTDAQHGHGE------ILKMTGHVHGMILKHSEEPTLYLAADTVWFEGVEKALKTYQPDVVVLNGGANQF--FEGGPLVMDEHDVLKVANTLPLAQIVVVHMEAVNHWHLSRKELNEFINSNDLGNRVVVPNDGELLTFEK
3RPC Chain:A ((9-264))
----HIRNATGKLTIKNTTFLIDPFLAPKDTYPGFEGTFNYQQRMPMVDLPLSMDDLLSNVTAVVVTHTHLDHWDDTAINSIPKSLPIFVQNTADKELITSQGFIDVRIIFESLEFNGITLRKTGGSHGTVEMYANPVLAPLAGDAMGVIFEAADEPTVYLVGDTVWTSDVEKALLRFDPNVIIMNTGYAQILGFEDS-IIMGTKDIGRMVVRKPEAKIIAVHMDTVNHTATSRKDVRKFIKGNNIESHVAVPEDGETITL--
General information:
TITO was launched using:
RESULT:
Template:
3RPC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173870 for 2113 contacts (-82.3/contact) +
2D Compatibility (PS) -27318 + (NN) -17157 + (LL) 460
1D Compatibility (HY) -22000 + (ID) 4600
Total energy: -244485.0 ( -115.71 by residue)
QMean score : 0.705
(partial model without unconserved sides chains):
PDB file :
Tito_3RPC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RPC-query.scw
PDB file :
Tito_Scwrl_3RPC.pdb
: