Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLNNYSLKVK--------NKQLVDNCDLNFYLGQINHIVGKNGVGKSLLAKDF---LLNNSGNI-----PKSISQ-NVTLISSSSNI----PND------ITKDFLLSLLKSKFENN--RQTFDKIYNILNIEAI---PSNVLLKNLSDGQKQKLKLLSFLLEDHDLIILDEVTNALDKKTVNEIYEFLNDFIQSHQTKTIINITHNLSDLSALPGKYFIFKDLQI------EEYQSKEEVINDYINL
3GFO Chain:A ((4-239))
---EDYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHC----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIR-----
General information:
TITO was launched using:
RESULT:
Template:
3GFO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94197 for 1424 contacts (-66.1/contact) +
2D Compatibility (PS) -21049 + (NN) -5957 + (LL) 1232
1D Compatibility (HY) -17600 + (ID) 3050
Total energy: -140621.0 ( -98.75 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_3GFO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GFO-query.scw
PDB file :
Tito_Scwrl_3GFO.pdb
: