Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAINIIEYNRSYKEELIEFILSIQKNEFNIKIDRDDQPDLENIEHNYLNSGGQFWLAINNHQNIVGTIGLIRLDNNMSALKKMFVDKGYRNLKIGKKLLDKVIMTCKEQNIDGIYLGTIDKFISAQYFYSNNGFREIKRGDLPSSFPKLDVDNRFYYRNLKD
3D8P Chain:A ((3-162))
-AINIIEYNRSYKEELIEFILSIQKNEFNIKIDRDDQPDLENIEHNYLNSGGQFWLAINNHQNIVGTIGLIRLDNNMSALKKMFVDKGYRNLKIGKKLLDKVIMTCKEQNIDGIYLGTIDKFISAQYFYSNNGFREIKRGDLPSSFPKL--DNRFYYRNLK-
General information:
TITO was launched using:
RESULT:
Template:
3D8P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93781 for 1196 contacts (-78.4/contact) +
2D Compatibility (PS) -16991 + (NN) -10057 + (LL) 248
1D Compatibility (HY) -24400 + (ID) 7900
Total energy: -152881.0 ( -127.83 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_3D8P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D8P-query.scw
PDB file :
Tito_Scwrl_3D8P.pdb
: