Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVLRKV---IMQDLDQIIALENIGF-----SPEEAATREALKLRIEQIQETFIVAEKNDEVIGYINGPVIKERYISDDLFKNVSINNSEGGYISVLGLVVAPNYQGQGIAGRLLNYFETLAKNHHR-HGVTLTC----------------------------RESLISFYEKYGYRNEGVSESCHGGIKWYNLVKNIKKDDEV------------
1B87 Chain:A ((1-181))
MIISEFDRNNPVLKDQLSDLLRLTWPEEYG----DSSAEEVEEMMNPERIAVAAVDQ-DELVGFIGAIPQ-YG----------------ITGWELHPLVVESSRRKNQIGTRLVNYLEKEVASR-GGITIYLGTDDLDHGTTLSQTDLYEHTFDKVASIQNLREHPYEFYEKLGYKIVGVLPNANG-----------WDKPDIWMAKTIIPRPDS
General information:
TITO was launched using:
RESULT:
Template:
1B87.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86468 for 881 contacts (-98.1/contact) +
2D Compatibility (PS) -14061 + (NN) -3399 + (LL) 1580
1D Compatibility (HY) -6800 + (ID) 1500
Total energy: -110648.0 ( -125.59 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_1B87.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B87-query.scw
PDB file :
Tito_Scwrl_1B87.pdb
: