Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELWPAIDLIGSTSVRLTEGKYDSEEKMSRSAEESIAYYSQFECVNRIHIVDLIGAKAQYAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAY---GED-IKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLN---VHAAIIGKAAHQASFWEGLE
2Y85 Chain:A ((5-233))
---LLPAVDVVEGRAVR---------TEYGSAVDAALGW--QRDGAEWIHLVDLDAAFGRGSNHELLAEVVGKLDVQ-VELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGG-DLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRF-----
General information:
TITO was launched using:
RESULT:
Template:
2Y85.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112858 for 1815 contacts (-62.2/contact) +
2D Compatibility (PS) -22899 + (NN) -6360 + (LL) 1364
1D Compatibility (HY) -15600 + (ID) 3100
Total energy: -159453.0 ( -87.85 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_2Y85.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y85-query.scw
PDB file :
Tito_Scwrl_2Y85.pdb
: