Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKKKFVSSCIASTILFGTLLGVTY---KAEAATVHVAGGVWSHGIGKHYVWSYYSHNKRNHGSTAVGKYSSF-----------SGVARPGVQSKASAPKAWGGNKTFYSLH-----
2OPC Chain:A ((13-127))
EGYTRFYRSPTASVILSG-LVKVKWDNEQMTMPLFKWIGGEQAEEL-HFCVHIAHSSGPKLNRARSLGTVNSNMDQHWAQAQRNSGATRRTIEGFHLFENDIPNFPDYIKIKLVPKT
General information:
TITO was launched using:
RESULT:
Template:
2OPC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36854 for 599 contacts (-61.5/contact) +
2D Compatibility (PS) -10327 + (NN) -2219 + (LL) -120
1D Compatibility (HY) -3600 + (ID) 900
Total energy: -54020.0 ( -90.18 by residue)
QMean score : 0.309
(partial model without unconserved sides chains):
PDB file :
Tito_2OPC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OPC-query.scw
PDB file :
Tito_Scwrl_2OPC.pdb
: