Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MKFQPLGERVLVERLEEENKTSSG--IIIPDNAKEKPLMGVVKAVS--HKISEGCKC----VKEGDVIAFGKYKG-AEIVLDGTEYMVLELEDILGIVGSGSCCHTGNHDHKHAKEHEACCHDHKKH
1P3H Chain:A ((1-99))
AKVNIKPLEDKILVQANEAETTTA--SGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKY-GGTEIKYNGEEYLILSARDVLAVVSK---------------------------
General information:
TITO was launched using:
RESULT:
Template:
1P3H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35588 for 519 contacts (-68.6/contact) +
2D Compatibility (PS) -9569 + (NN) 1533 + (LL) 640
1D Compatibility (HY) -6000 + (ID) 1850
Total energy: -50834.0 ( -97.95 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_1P3H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P3H-query.scw
PDB file :
Tito_Scwrl_1P3H.pdb
: