Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKGKSVKSTKKSVGMPPKTPKTDNNANSHVDNEFLILQVNDAVFPIGSYTHSFGLETYIQQKKVTNKESALEYLKANLSSQFLYTEMLSLKLTYESTLQQDLKKILGIEEVIMLSTSPMELRLANQKLGNRFIKTLQAMNELDMGAFFNAYAQTTKDPTHATSYGVFAASLNMELKKALRHYLYAQTSNMVINCVKSVPLSQNDGQKILLSLQSPFNQLIEKTLELDESHLCAASVQNDIKAMQHESLYSRLYMS
3SF5 Chain:C ((25-254))
------------------------NNA--HVDNEFLILQVNDAVFPIGSYTHSFGLETYIQQKKVTNKESALEYLKANLSSQFLYTEMLSLKLTYESALQQDLKKILGVEEVIMLSTSPMELRLANQKLGNRFIKTLQAMNELDMGEFFNAYAQKTKDPTHATSYGVFAASLGIELKKALRHYLYAQTSNMVINCVKSVPLSQNDGQKILLSLQSPFNQLIEKTLELDESHLCTASVQNDIKAMQHESLYSRLYMS
General information:
TITO was launched using:
RESULT:
Template:
3SF5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82145 for 1886 contacts (-43.6/contact) +
2D Compatibility (PS) -24707 + (NN) -10546 + (LL) 296
1D Compatibility (HY) -34000 + (ID) 11150
Total energy: -162252.0 ( -86.03 by residue)
QMean score : 0.404
(partial model without unconserved sides chains):
PDB file :
Tito_3SF5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SF5-query.scw
PDB file :
Tito_Scwrl_3SF5.pdb
: