Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKVSVITACFNSEKTIEDTILSVLNQTYKNIEYIIIDGASADSTLEIIQKYK--DRIACVMSE--------KDEGIYDAMNKGIKRSSGDIIALLNSDDFYKDEFVVEKVVHEFENKNCDSVYGDLGVVK-PDCLEKVVRYYESGEFSPKTLLYGVVPAHPTLFVKKAIYERYGLYKTDYKI--SADFEMIIRLFVVQKISFSYLKEVLVIMRTGGVSASGFKSLLLRNKENLRACQENGIQANVFSMLLKYPRKIMGLFKRESKGSLKRND
1QG8 Chain:A ((1-255))
-PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNDIVKETVRPAAQVTWNAPCAIDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRV--NHFYPFYPLDEELDLNYITEFVRNLPPQ--------------------------RNCRELRESLKKLGMG------
General information:
TITO was launched using:
RESULT:
Template:
1QG8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113237 for 1785 contacts (-63.4/contact) +
2D Compatibility (PS) -24616 + (NN) -12271 + (LL) 3016
1D Compatibility (HY) -10000 + (ID) 2100
Total energy: -159208.0 ( -89.19 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_1QG8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QG8-query.scw
PDB file :
Tito_Scwrl_1QG8.pdb
: