Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METIEWNEEQRKAFQDLLREFVALIDAKVQEKKQMGKKPKIPKYASCQNGLNKFLAPWGYACKISLGTGLLSHEPSIAFCRQDILGEGFVNGEKPTPTKGFYLWFAYYWRNDLEKIDLCIGRSDEEDKKEECQKCLAYDKIIPNRNECYREL-------------------------------------------
3SSC Chain:A ((2-155))
-----------ESIQPWIEKFIKQAQQQ-----RSQSTKDYPTSYR------------NLRVKLSFGYGNFTSIPWFAFLGEGQ-----------EASNGIYPVILYY--KDFDELVLAYGISDTNEPHAQWQFSSDIPKTIAEYFQATSGVYPKKYGQSYYACSQKVSQGIDYTRFASMLDNIINDYKLIFNSG
General information:
TITO was launched using:
RESULT:
Template:
3SSC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37099 for 729 contacts (-50.9/contact) +
2D Compatibility (PS) -11395 + (NN) -1202 + (LL) 2564
1D Compatibility (HY) -6000 + (ID) 1100
Total energy: -54232.0 ( -74.39 by residue)
QMean score : 0.417
(partial model without unconserved sides chains):
PDB file :
Tito_3SSC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SSC-query.scw
PDB file :
Tito_Scwrl_3SSC.pdb
: