Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRYIKFFKE----LNNKNVNLVGGKNASIGEMFQELVPIGIKVPDGFAITSEAYWYLLEQ-----GGAKQKIIELLENVDA---------TEIDVLKIRSK------QIRELIFGTPFPSDLRDEIFQ------AYE---ILSQQYH------------------MKEADVAVRSSATAEDLPDASFAGQQD-TYLNIKGK-------TELIHYIKSCLASLFTDRAISYRASRGFDHLKVALSVGVQKMVRADK---GSAGVMFSIDTETGFKDAVFITSAWGLGENVVGGTINPDEFYVFKPTLEQNKRPIIKRQLGNKTQKMVYAPRGSEHPTRNIKTTKKEWQSFSLSDEDVLILAKYAIEIEKHYSKEAKQYRPMDIEWAKDGESGEIFIVQARPETVQSQKTKEENQV------------------------FEKFKFKNP-NEKKEIILQGRAIGSKIGSGKVRIINDLEH-MNSFKEGEILVTDNTDPDWEPCMKKASAVITNRGGRTCHAAIVAREIGVPAIVGVSGAT------------DSLYTGMEITVSCAEGEEGYVYAGIYEHEIERV-------ELSNMQETQTKIYINIGNPEKAFSFSQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKKSVKEKNEIENLMAGYANPKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGS-------------------SY-EPNEENPMLGYRGASRYYSESYNEAFSWECEALALVREE---MGL-TNMKVMIPFLRTIEEGKKVLEILRKNNLE-----SGKNGLEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTLGVDRDSELV-SH--------VFDERN----EAMLKMFKKAIEACKR--HNKYCGICGQAPSDYPEVTEFLVKEGITSISLNPDSVIPTWNAVAKLEKELKDHGLTAR |
| 1VBG Chain:A ((3-875)) | KKRVFHFGKGKSEGNKTMKELLGGKGANLAEMAS----IGLSVPPGFTVSTEACQQYQDAGCALPAGLWAEIVDGLQWVEEYMGATLGDPQRPLLLSVRSGAAVSMPGMMDTVLNLGLNDEVAAGLAAKSGERFAYDSFRRFLDMFGNVVMDIPRSLFEEKLEHMKESKGLKNDTDLTASDLK--ELVGQYKEVYLSAKGEPFPSDPKKQLELAVLAVFNSWESPRAKKYRSINQITG-LRGTAVNVQCMVFGNMGNTSGTGVLFTRNPNTGEKKLYGEFLVNAQGEDVVAGIRTPEDLDAMK----------------------------------------------NLMPQAYDELVENCNILESHYK------EMQDIEFTVQ--ENRLWMLQCRTGKRTGKSAVK-IAVDMVNEGLVEPRSAIKMVEPGHLDQLLHPQFENPSAYKDQVIATGLPASPGAAVGQVVFTAEDAEAWHSQGKAAILVRAETSPEDVGGMHAAVGILTERGGMTSHAAVVARGWGKCCVSGCSGIRVNDAEKLVTIGGHVLREGEWL---SLNGSTGEVILGKQPLSPPALSGDLGTFMAWVDDVRKLKVLANADTPDDALTARNNGAQGIGLCRTEHMFFAS-DERIKAVRQMIMAPTLE----------LRQQALDRLLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGNIEDIVSELCAETGANQEDALARIEKLSEVNPMLGFRGCRLGISY--PELTEMQARAIFEAAIAMTNQGVQVFPEIMVPLVGTPQELGHQVTLIRQVAEKVFANVGKTIGYKVGTMIEIPRAALVADEIAEQAEFFSFGTNDLTQMTFGYSRDDVGKFIPVYLAQGILQHDPFEVLDQRGVGELVKFATERGRKARPNLKVGICGEHGG-EPSSVAFFAKAGLDYVSCSPFRVPIARLAAAQVLV---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VBG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -268752 for 5966 contacts (-45.0/contact) +
2D Compatibility (PS) -77465 + (NN) -25170 + (LL) 5764
1D Compatibility (HY) -17600 + (ID) 8950
Total energy: -392173.0 ( -65.73 by residue)
QMean score : 0.366
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