Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSMYYAFRDRKQKKREFRSLWVVRINAACRMHNTSYSRFMHALKVANIELDRKVLADMAMNDMQAFKSVLESVKEHL
4IOC Chain:N ((3-112))
-RAKTGIVRRRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDASRNAR
General information:
TITO was launched using:
RESULT:
Template:
4IOC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20601 for 638 contacts (-32.3/contact) +
2D Compatibility (PS) -12240 + (NN) -7223 + (LL) 208
1D Compatibility (HY) -7600 + (ID) 2950
Total energy: -50406.0 ( -79.01 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_4IOC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IOC-query.scw
PDB file :
Tito_Scwrl_4IOC.pdb
: