Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKELILKRIKEARAKHAIQGANPIYRNIIKVEFEDLVEEYKHFQVLNKAELIESAKENLEQAILKALENFQSKKV---LHSTDLNLNFEAFKDFTLQPYDKEIEAMREELFEIDTALLHGVCGISSLGMIGAVSSHASP---RLLSLITLNCIILLKKESIVRNLSEGVQALKNQGQNGALPTNMLLIGGPSRTADIELKTVFGVHGPQKVAVILY
2G40 Chain:A ((38-210))
-----------------------PLSRAEILHQFEDRILDYG-------AAYTHVSAAELPGAIAKALGNARRVIVPAGIPAPWLTVGMDVLRD--------EPPLSHAELDRADAVLTGCAVAISETGTI--ILDHRADQGRRALSLIPDFHICVVREDQIVQTVREGVEAVAASVREG---RPLTWLSGGS-----------GVHGPRRLQVIVV
General information:
TITO was launched using:
RESULT:
Template:
2G40.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87527 for 1186 contacts (-73.8/contact) +
2D Compatibility (PS) -16669 + (NN) -3011 + (LL) 4660
1D Compatibility (HY) -8800 + (ID) 2500
Total energy: -113847.0 ( -95.99 by residue)
QMean score : 0.319
(partial model without unconserved sides chains):
PDB file :
Tito_2G40.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2G40-query.scw
PDB file :
Tito_Scwrl_2G40.pdb
: