Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIKQILTILTPFFVATLLYFLGAPDGLNPNAWLYFCIFMGMIIGLILEPVPSGLIALSALVPCIALKIGASSEVASANKAISWGLSGYANKTVWLVFVAFILGLGYEKSLLGKRIALLLIRFLGQTPLGLGYAIGLSELCLAPFIPSNSARSGGILYPIVSSIPPLMGSTPSNNPDKIGAYLMWVALASTCITSSMFLTALAPNPLAMEIATKMGVNEISWFSWFLAFLPCGVVLILLVPLLAYKTCKPTLKGSKEVSL--WAKKELESMGRFSLKEILMLSLTLLALLGWIFGK----SLGLHASATALIVM---VLMAFCKIVSYEDIIKNKSAFNIFLLLGSLLTMAGGLKNVGFLNFIGNAAQNFLEHAHLDPLIAVLFIVALFYLSHYFFASITAHVSALFALFVGIGSHIQGVNLQELSLFLMLSLGIMGILTPYGTGPSTIYYGSGYIQSKDFWKWGFIFGFLYLIVFLSVCAPWVKFIAYRWL |
4F35 Chain:D ((189-429)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PNAIA---AAEVGLSFTDWMKFGL---PTAMMMLPMAIAILYFLL------------VNWDKGKVVTLGIFGLTVFL-----------WIFSSPINAALGGFKSFDTLVALGAILMLSFARVVHWKEIQKTAD-WGVLLLFGGGLCLSNVLKQTGTSVFLANALSDMVSHM---GIFVVILVVATFVVFLTEFASNTASAALLIPVFATVAEAF-GMSPVLLSVLIAVAASCAFML-PVATPPNAIVFASGHIKQSEMMRVGLYLNIACIGLLTAIAMLFWQ------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4F35.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -156959 for 1475 contacts (-106.4/contact) +
2D Compatibility (PS) -22763 + (NN) -9718 + (LL) 18388
1D Compatibility (HY) -23600 + (ID) 3000
Total energy: -197652.0 ( -134.00 by residue)
QMean score : 0.221
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