Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFSFLEKNPFFFTLAFIFVFSIAGLVEILPNFF--KSARPIEGLRPYTVLETAGRQIYIQEGCYHCHSQLIRPFQAEVDRYGAYSLSGEYAYDRPFLWGSKRIGPDLHRVGDYRTTDWHEKHMLDPKSVVPHSIMPAYKHLFIKKSDFDTAYAEALTQKKVFGVPYDTENGVKLGNVEEAKKAYLEEAKKITADMKDKRVLEAIERGEVLEIVALIAYLNSLGNSRINANQNAK
3MK7 Chain:B ((6-202))
---KLEKNVGLLTLFMILAVSIGGLTQIVPLFFQDSVNEPVEGMKPYTALQLEGRDLYIREGCVGCHSQMIRPFRAETERYGHYSVAGESVYDHPFLWGSKRTGPDLARVGGRYSDDWHRAHLYNPRNVVPESKMPSYPWLVENTLD-GKDTAKKMSALRMLGVPYT-----------------EEDIAGARDSVNGKT-----------EMDAMVAYLQVLGTALTNK-----
General information:
TITO was launched using:
RESULT:
Template:
3MK7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32862 for 1385 contacts (-23.7/contact) +
2D Compatibility (PS) -20384 + (NN) -8913 + (LL) 2928
1D Compatibility (HY) -16400 + (ID) 4600
Total energy: -80231.0 ( -57.93 by residue)
QMean score : 0.335
(partial model without unconserved sides chains):
PDB file :
Tito_3MK7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MK7-query.scw
PDB file :
Tito_Scwrl_3MK7.pdb
: