Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLNGLAGNLLIVVILLCVVVFFALKAIHIQKEQATNYYRYKDINALEAKNTQNHANYELVNQGSKK
1GK6 Chain:A ((355-409))
MK-------------QLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLEGEES
General information:
TITO was launched using:
RESULT:
Template:
1GK6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 357 for 221 contacts (1.6/contact) +
2D Compatibility (PS) -6007 + (NN) -3972 + (LL) 1064
1D Compatibility (HY) -400 + (ID) 600
Total energy: -9558.0 ( -43.25 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_1GK6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GK6-query.scw
PDB file :
Tito_Scwrl_1GK6.pdb
: