Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLTIKDIHALEVMDSRGNPTIQASVILSDNTKASAIVPSGASTGKREALELRDNDKTRFLGKGVLRACENVNSVIKHHLIGLEATNQAFVDERLRALDGTPNYANLGANAVLGVSMALARASAKALNLPLYRYLGGANALTLPVPMLNIINGGTHANNSIDFQEYMIMPLGFESFKEALRASAEVYHTLKKLLDEKNQLTSVGDEGGFAPNFNNNVEPLEIISQAIEKAGYKLGEEIALALDVASSELVDEHFNYHLKGENKILDSHELVAYYKELVAKYPIVSIEDGLSEDDWEGWAFLSKELGRQIQLVGDDLFVTNASILQKGIEKNVANAILIKPNQIGTISETLETIRLAKHHAYQCVISHRSGESEDSFIADFAVALNTGEIKTGSTARSERIAKYNRLLEIEHEL-KGGIYIGKELFKHG |
4YWS Chain:B ((5-425)) | ---IEAIVAREVLDSRGNPTIEVDVRLESGDVGRAIVPSG----------LRDGDKSRYNGKGVLKAVQAVNEDIAEALIGFDAADQIALDQELIALDGTPNKSKLGANAILGVSLAAAKAAAAAFGLPLYRYLGGVYAHVLPVPMMNIMNGGQHAT---DFQEFMIMPVGAESFREGLRWGAEIYHMLKKVIHDR--------EGGFAPSL-TNDAPLQLIMEAIEKAGYRPGEQIVIALDPATTEIF-----YHLK-EGR--SSAEMVDYWVDLVNRYPIISLEDGLAEDDWEGWALL-AKLGDRVQLVGDDFLVTNVQRLQRAIEAKAANSILIKLNQIGSLTETLSAIQLAQRSGWTAVVSHRSG-SEDVTIADLVVATNAGQIKTGAPA-TDRIAKYNQLLRIEEELGSAARYAGRSAFKV- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4YWS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -205727 for 3457 contacts (-59.5/contact) +
2D Compatibility (PS) -42741 + (NN) -23523 + (LL) 1876
1D Compatibility (HY) -37200 + (ID) 11450
Total energy: -318765.0 ( -92.21 by residue)
QMean score : 0.611
|
|
|